intersect_bed: Apply 'intersect' operation between two tables

In haizi-zh/bioessentials: Home-made essential tools for bioinformatics project

Description

Apply intersect operation between two tables

Usage

intersect_bed(
  x,
  y,
  mode = c("default", "exclude", "wa", "wb", "wo", "unique", "loj"),
  max_gap = 0,
  min_overlap = 1
)

Arguments

mode	default: Similar to bedtools intersect's default behavior. wa: Similar to bedtools intersect's -wa argument. wb: Similar to bedtools intersect's -wb argument. unique: Similar to bedtools intersect's -u argument.
max_gap	The largest gap for two intervals to be considered as overlapping. Default is 0 (no gap allowed).
min_overalp	The smallest overlapping region for two intervals to be considered as overlapping. Default is 1.

haizi-zh/bioessentials documentation built on April 10, 2021, 2:34 p.m.