plot_maps: plot_maps maining plotting function

In halasadi/plotmaps: Plotting Migration and Population Size Surfaces

Description

plot_maps maining plotting function

Usage

plot_maps(add.pts = TRUE, add.graph = TRUE, add.countries = FALSE,
  plot.mean = TRUE, longlat, mcmcpath, outpath, width = 10, height = 6,
  plot.difference = FALSE, set.range = FALSE, alpha = 0.1,
  m.limits = NA, N.limits = NA, trans = NA)

Arguments

add.pts	mark demes that are sampled (boolean)
add.graph	overlay the underlying graph (boolean)
add.countries	add country borders (boolean)
plot.mean	plots the mean if TRUE and mean if FALSE (boolean)
longlat	order of longitude/lattitude in the .coords and .outer file (boolean)
mcmcpath	path to mcmc output files
outpath	files will be written to this path
width	width of the main MAPS plot
height	height of the main MAPS plot
plot.difference	set TRUE if user ran MAPS with the olderpath parameter set, this way MAPS only estimates the difference (boolean)
set.range	TRUE if range is set as custom
alpha	the significance level, such that rates exceeding that level will be shown in the sign plot
m.limits	limits of the migration surface plot (used if set.range==TRUE)
N.limits	limits of the population-size surface plot (used if set.range==TRUE)

halasadi/plotmaps documentation built on May 13, 2019, 6:13 p.m.