In han16/GEARS: Gaussian differEntiAl netwoRk analysiS

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

GEARS

The goal of GEARS is to reconstruct Gaussian Bayesian network and compare two networks (identical or differential) with graph ordering unknown.

Installation

You can install the released version of GEARS from CRAN with:

install.packages("GEARS")

And the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("han16/GEARS")

In case people have installation problem, try this

remove.packages(c("curl","httr"))
install.packages(c("curl", "httr"))
Sys.setenv(CURL_CA_BUNDLE="/usr/lib64/microsoft-r/3.4/lib64/R/lib/microsoft-r-cacert.pem")
devtools::install_git("https://github.com/han16/GEARS")

Example

library(GEARS)
## basic example code
head(exampleData1)
head(exampleData4)

exampleData1 is the regression coefficient in the network
exampleData4 is one simulated data set with number of node as the number of the columns, 10.