samplebamfiles: A data frame for example expression bam files.

In hangost/IMAS: Integrative analysis of Multi-omics data for Alternative Splicing

Description

A path and identifier of bam files for 50 samples. For each bam file, mapped reads were randomly generated that came from the genomic region of chr11: 100,933,178 - 100,996,889. With each simulated bam file of 50 samples, PSI level is calculated for the exon that is located in chr11: 100,962,491-100,962,607. The simulated PSI values are in the range of 0.6 to 1.0. The range of 0.9 to 1.0 of PSI values are assigned to PR-positive group and 0.5 to 0.6 to PR-negative group. The detailed overview of the data is described in the vignette.

Usage

data(bamfilestest)

Format

A data frame with paths and identifiers on the 50 samples

Value

A data frame with paths and identifiers on the 50 samples

Source

The data was provided from IMAS

Examples

    data(bamfilestest)
    

hangost/IMAS documentation built on May 17, 2019, 2:28 p.m.