Files in hannahlowens/occCite
Querying and Managing Large Biodiversity Occurrence Datasets

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/rhub.yaml
.github/workflows/test-coverage.yaml
.gitignore
CONTRIBUTING.md
CRAN-SUBMISSION
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md R/GBIFLogin.R R/GBIFLoginManager.R R/GBIFtableCleanup.R R/data.R R/gbifRetriever.R R/getBIENpoints.R R/getGBIFpoints.R R/occCitation.R R/occCiteCitation.R R/occCiteData.R R/occCitePrint.R R/occCite_plotting.R R/occQuery.R R/occSum.R R/prevGBIFdownload.R R/studyTaxonList.R R/tabGBIF.R R/taxonRectification.R README.md
_config.yml
_pkgdown.yml
codecov.yml
codemeta.json
cran-comments.md
data/myOccCiteObject.rda
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/a_Simple.html
docs/articles/a_Simple_files/figure-html/plotting a simple search-1.png
docs/articles/a_Simple_files/figure-html/plotting a simple search-2.png
docs/articles/a_Simple_files/figure-html/plotting a simple search-3.png
docs/articles/b_Advanced.html
docs/articles/b_Advanced_files/figure-html/plotting all species-1.png
docs/articles/b_Advanced_files/figure-html/plotting all species-2.png
docs/articles/b_Advanced_files/figure-html/plotting all species-3.png
docs/articles/b_Advanced_files/figure-html/plotting phylogenetic search by species-1.png
docs/articles/b_Advanced_files/figure-html/plotting phylogenetic search by species-2.png
docs/articles/b_Advanced_files/figure-html/plotting phylogenetic search by species-3.png
docs/articles/b_Advanced_files/figure-html/plotting phylogenetic search by species-4.png
docs/articles/b_Advanced_files/figure-html/plotting phylogenetic search by species-5.png
docs/articles/b_Advanced_files/figure-html/plotting phylogenetic search by species-6.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.3.1/bootstrap.min.css
docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js
docs/deps/clipboard.js-2.0.11/clipboard.min.js
docs/deps/data-deps.txt
docs/deps/font-awesome-6.4.2/css/all.css
docs/deps/font-awesome-6.4.2/css/all.min.css
docs/deps/font-awesome-6.4.2/css/v4-shims.css
docs/deps/font-awesome-6.4.2/css/v4-shims.min.css
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.woff2
docs/deps/headroom-0.11.0/headroom.min.js
docs/deps/headroom-0.11.0/jQuery.headroom.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/logo.png
docs/man/figures/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/readme.html
docs/reference/BIENtableCleanup.html
docs/reference/GBIFLogin-class.html
docs/reference/GBIFLogin.html
docs/reference/GBIFLoginManager.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/figures/logo.png
docs/reference/figures/occHex.ai
docs/reference/figures/occHex.png
docs/reference/figures/occTag.png
docs/reference/getBIENpoints.html
docs/reference/getGBIFpoints.html
docs/reference/index.html
docs/reference/libs/Proj4Leaflet-1.0.1/proj4leaflet.js
docs/reference/libs/fontawesome-4.7.0/bootstrap-theme.min.css
docs/reference/libs/fontawesome-4.7.0/bootstrap.min.css
docs/reference/libs/fontawesome-4.7.0/bootstrap.min.js
docs/reference/libs/fontawesome-4.7.0/font-awesome.min.css
docs/reference/libs/fontawesome-4.7.0/fonts/FontAwesome.otf
docs/reference/libs/fontawesome-4.7.0/fonts/fontawesome-webfont.eot
docs/reference/libs/fontawesome-4.7.0/fonts/fontawesome-webfont.svg
docs/reference/libs/fontawesome-4.7.0/fonts/fontawesome-webfont.ttf
docs/reference/libs/fontawesome-4.7.0/fonts/fontawesome-webfont.woff
docs/reference/libs/fontawesome-4.7.0/fonts/glyphicons-halflings-regular.eot
docs/reference/libs/fontawesome-4.7.0/fonts/glyphicons-halflings-regular.svg
docs/reference/libs/fontawesome-4.7.0/fonts/glyphicons-halflings-regular.ttf
docs/reference/libs/fontawesome-4.7.0/fonts/glyphicons-halflings-regular.woff
docs/reference/libs/fontawesome-4.7.0/fonts/ionicons.eot
docs/reference/libs/fontawesome-4.7.0/fonts/ionicons.svg
docs/reference/libs/fontawesome-4.7.0/fonts/ionicons.ttf
docs/reference/libs/fontawesome-4.7.0/fonts/ionicons.woff
docs/reference/libs/fontawesome-4.7.0/images/markers-matte.png
docs/reference/libs/fontawesome-4.7.0/images/markers-matte@2x.png
docs/reference/libs/fontawesome-4.7.0/images/markers-plain.png
docs/reference/libs/fontawesome-4.7.0/images/markers-shadow.png
docs/reference/libs/fontawesome-4.7.0/images/markers-shadow@2x.png
docs/reference/libs/fontawesome-4.7.0/images/markers-soft.png
docs/reference/libs/fontawesome-4.7.0/images/markers-soft@2x.png
docs/reference/libs/fontawesome-4.7.0/ionicons.min.css
docs/reference/libs/fontawesome-4.7.0/leaflet.awesome-markers.css
docs/reference/libs/fontawesome-4.7.0/leaflet.awesome-markers.js
docs/reference/libs/fontawesome-4.7.0/leaflet.awesome-markers.min.js
docs/reference/libs/htmlwidgets-1.5.4/htmlwidgets.js
docs/reference/libs/jquery-1.12.4/jquery.min.js
docs/reference/libs/leaflet-1.3.1/images/layers-2x.png
docs/reference/libs/leaflet-1.3.1/images/layers.png
docs/reference/libs/leaflet-1.3.1/images/marker-icon-2x.png
docs/reference/libs/leaflet-1.3.1/images/marker-icon.png
docs/reference/libs/leaflet-1.3.1/images/marker-shadow.png
docs/reference/libs/leaflet-1.3.1/leaflet.css
docs/reference/libs/leaflet-1.3.1/leaflet.js
docs/reference/libs/leaflet-awesomemarkers-2.0.3/bootstrap-theme.min.css
docs/reference/libs/leaflet-awesomemarkers-2.0.3/bootstrap.min.css
docs/reference/libs/leaflet-awesomemarkers-2.0.3/bootstrap.min.js
docs/reference/libs/leaflet-awesomemarkers-2.0.3/font-awesome.min.css
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/FontAwesome.otf
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/fontawesome-webfont.eot
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/fontawesome-webfont.svg
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/fontawesome-webfont.ttf
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/fontawesome-webfont.woff
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/glyphicons-halflings-regular.eot
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/glyphicons-halflings-regular.svg
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/glyphicons-halflings-regular.ttf
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/glyphicons-halflings-regular.woff
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/ionicons.eot
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/ionicons.svg
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/ionicons.ttf
docs/reference/libs/leaflet-awesomemarkers-2.0.3/fonts/ionicons.woff
docs/reference/libs/leaflet-awesomemarkers-2.0.3/images/markers-matte.png
docs/reference/libs/leaflet-awesomemarkers-2.0.3/images/markers-matte@2x.png
docs/reference/libs/leaflet-awesomemarkers-2.0.3/images/markers-plain.png
docs/reference/libs/leaflet-awesomemarkers-2.0.3/images/markers-shadow.png
docs/reference/libs/leaflet-awesomemarkers-2.0.3/images/markers-shadow@2x.png
docs/reference/libs/leaflet-awesomemarkers-2.0.3/images/markers-soft.png
docs/reference/libs/leaflet-awesomemarkers-2.0.3/images/markers-soft@2x.png
docs/reference/libs/leaflet-awesomemarkers-2.0.3/ionicons.min.css
docs/reference/libs/leaflet-awesomemarkers-2.0.3/leaflet.awesome-markers.css
docs/reference/libs/leaflet-awesomemarkers-2.0.3/leaflet.awesome-markers.js
docs/reference/libs/leaflet-awesomemarkers-2.0.3/leaflet.awesome-markers.min.js
docs/reference/libs/leaflet-binding-2.0.4.1/leaflet.js
docs/reference/libs/leaflet-binding-2.1.0/leaflet.js
docs/reference/libs/leaflet-providers-1.9.0/leaflet-providers_1.9.0.js
docs/reference/libs/leaflet-providers-plugin-2.0.4.1/leaflet-providers-plugin.js
docs/reference/libs/leaflet-providers-plugin-2.1.0/leaflet-providers-plugin.js
docs/reference/libs/leafletfix-1.0.0/leafletfix.css
docs/reference/libs/proj4-2.6.2/proj4.min.js
docs/reference/libs/rstudio_leaflet-1.3.1/images/1px.png
docs/reference/libs/rstudio_leaflet-1.3.1/rstudio_leaflet.css
docs/reference/map.occCite.html
docs/reference/myOccCiteObject.html
docs/reference/occCitation.html
docs/reference/occCiteCitation-class.html
docs/reference/occCiteCitation.html
docs/reference/occCiteData-class.html
docs/reference/occCiteData.html
docs/reference/occCiteMap.html
docs/reference/occQuery.html
docs/reference/plot.occCiteData-1.png
docs/reference/plot.occCiteData-2.png
docs/reference/plot.occCiteData-3.png
docs/reference/plot.occCiteData.html
docs/reference/prevGBIFdownload.html
docs/reference/print.occCiteCitation.html
docs/reference/studyTaxonList.html
docs/reference/sumFig.occCite-1.png
docs/reference/sumFig.occCite-2.png
docs/reference/sumFig.occCite-3.png
docs/reference/sumFig.occCite.html
docs/reference/summary.occCiteData.html
docs/reference/taxonRectification.html
docs/search.json
docs/sitemap.xml
inst/CITATION
inst/extdata/Fish_12Tax_time_calibrated.tre
inst/extdata/Protea_cynaroides/0169441-210914110416597.zip
inst/extdata/Tetrapturus_angustirostris/0006577-190621201848488.zip
inst/extdata/Tetrapturus_belone/0006578-190621201848488.zip
inst/extdata/Tetrapturus_pfluegeri/0006585-190621201848488.zip
man/GBIFLogin-class.Rd man/GBIFLoginManager.Rd
man/figures/logo.png
man/figures/occHex.ai
man/figures/occHex.png
man/figures/occTag.png
man/getBIENpoints.Rd man/getGBIFpoints.Rd man/myOccCiteObject.Rd man/occCitation.Rd man/occCiteCitation-class.Rd man/occCiteData-class.Rd man/occCiteMap.Rd man/occQuery.Rd man/plot.occCiteData.Rd man/prevGBIFdownload.Rd man/print.occCiteCitation.Rd man/studyTaxonList.Rd man/summary.occCiteData.Rd man/taxonRectification.Rd
occCite.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R tests/testthat/test-GBIFLoginManager.R tests/testthat/test-GBIFtableCleanup.R tests/testthat/test-gbifRetriever.R tests/testthat/test-getBIENpoints.R tests/testthat/test-getGBIFpoints.R tests/testthat/test-map.R tests/testthat/test-occCitation.R tests/testthat/test-occCitePrint.R tests/testthat/test-occSum.R tests/testthat/test-prevGBIFdownload.R tests/testthat/test-studyTaxonList.R tests/testthat/test-sumFig.R tests/testthat/test-tabGBIF.R tests/testthat/test-tabulate.R tests/testthat/test-taxonRectification.R vignettes/a_Simple.R vignettes/a_Simple.Rmd
vignettes/a_Simple.html
vignettes/b_Advanced.R vignettes/b_Advanced.Rmd
vignettes/b_Advanced.html
hannahlowens/occCite documentation built on Oct. 18, 2024, 1:18 a.m.