controlStripPlot: Plot control probe signals.

In hansenlab/minfi: Analyze Illumina Infinium DNA methylation arrays

Plot control probe signals.

Description

Strip plots are produced for each control probe type specified.

Usage

controlStripPlot(rgSet, controls = c("BISULFITE CONVERSION I",
    "BISULFITE CONVERSION II"), sampNames = NULL, xlim = c(5, 17))

Arguments

rgSet	An RGChannelSet.
controls	A vector of control probe types to plot.
sampNames	Sample names to be used for labels.
xlim	x-axis limits.

Details

This function produces the control probe signal plot component of the QC report.

Value

No return value. Plots are produced as a side-effect.

Author(s)

Martin Aryee [e-mail].

See Also

qcReport, mdsPlot, densityPlot, densityBeanPlot

Examples

if (require(minfiData)) {

names <- pData(RGsetEx)$Sample_Name
controlStripPlot(RGsetEx, controls=c("BISULFITE CONVERSION I"), sampNames=names)

}

hansenlab/minfi documentation built on Feb. 2, 2024, 11:23 a.m.