minfiQC | R Documentation |
This function combines a number of functions into a simple to use, one step QC step/
minfiQC(object, fixOutliers = TRUE, verbose = FALSE)
object |
An object of class |
fixOutliers |
Should the function fix outlying observations
(using |
verbose |
Should the function be verbose? |
A number of functions are run sequentially on the object
.
First outlier values are thresholded using fixMethOutliers
.
Then qc is performed using getQC
and then sample specific sex
is estimated using getSex
.
A list with two values,
object |
The |
qc |
A |
Kasper D. Hansen
getSex
, getQC
, fixMethOutliers
if(require(minfiData)) {
out <- minfiQC(MsetEx)
## plotQC(out$qc)
## plotSex(out$sex)
}
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