cytof_addToFCS: Add data to the original FCS files

In haoeric/cytofkit_devel: cytofkit: an integrated mass cytometry data analysis pipeline

Description

Store the new dimension transformed data and cluster data into the exprs matrix in new fcs files under analyzedFCSdir

Usage

cytof_addToFCS(data, rawFCSdir, analyzedFCSdir, transformed_cols = c("tsne_1",
  "tsne_2"), cluster_cols = c("cluster"), inLgclTrans = TRUE)

Arguments

data	The new data matrix to be added in.
rawFCSdir	The directory containing the original fcs files.
analyzedFCSdir	The directory to store the new fcs files.
transformed_cols	the column name of the dimension transformend data in data.
cluster_cols	the column name of the cluster data in data.
inLgclTrans	Boolean value decides if apply the inverse lgcl transformation to the the cluster data before saving

Value

new fcs files stored under analyzedFCSdir

haoeric/cytofkit_devel documentation built on May 17, 2019, 2:29 p.m.