Man pages for haowulab/DSS
Dispersion shrinkage for sequencing data
| callDML | Function to detect differntially methylated loci (DML) from... |
| callDMR | Function to detect differntially methylated regions (DMR)... |
| design | Experimental design for the example RRBS dataset |
| dispersion | Acessor functions for the 'dispersion' slot in a SeqCountData... |
| DMLfit.multiFactor | Fit a linear model for BS-seq data from general experimental... |
| DMLtest | Function to perform statistical test of differntially... |
| DMLtest.multiFactor | Perform statistical test for BS-seq data from general... |
| DSS.DE | Perform RNA-seq differential expression analysis in two-group... |
| DSS-package | Dispersion shrinkage for sequencing data |
| estDispersion | Estimate and shrink tag-specific dipsersions |
| estNormFactors | Estimate normalization factors |
| makeBSseqData | Create an object of BSseq class from several data frames. |
| normalizationFactor | Accessor functions for the 'normalizationFactor' slot in a... |
| RRBS | An example dataset for multiple factor design |
| SeqCountSet-class | Class '"SeqCountSet"' - container for count data from... |
| seqData | A simulated 'SeqCountData' object. |
| showOneDMR | Visualze the count data for one DMR |
| waldTest | Perform gene-wise Wald test for two group comparisons for... |
