API for hbc/bcbioBase
bcbio Base Functions

Global functions
AllGenerics Man page
DataFrame Man page
GRanges Man page
IRanges Man page
\%>\% Man page
as Man page
assert Man page
assertFormalAnnotationCol Man page Source code
assertFormalInterestingGroups Man page Source code
bcbio Man page
bcbio<- Man page
bcbioBase Man page
bcbioBase-package Man page
bcbio_geom_abline Man page Source code
bcbio_geom_label Man page Source code
bcbio_geom_label_average Man page Source code
bcbio_geom_label_repel Man page Source code
checkInterestingGroups Man page Source code
coerce Man page
coerce-SummarizedExperiment-list Man page
convertGenesToSymbols Man page
convertGenesToSymbols,SummarizedExperiment-method Man page
copyToDropbox Man page Source code
counts Man page
counts,SummarizedExperiment-method Man page
deprecated Man page
flatFiles Man page Man page
flatFiles,SummarizedExperiment-method Man page
gene2symbol Man page Man page
gene2symbol,SummarizedExperiment-method Man page
general Man page
ggplot2 Man page
glimpse Man page
inferno Man page
interestingGroups Man page Man page
interestingGroups,SummarizedExperiment-method Man page
interestingGroups<- Man page
interestingGroups<-,SummarizedExperiment,character-method Man page
labelSep Man page
lanePattern Man page
magma Man page
metadata Man page
metadataBlacklist Man page
metrics Man page
minimalSampleData Man page Source code
pheatmapAnnotationCol Source code
pheatmapAnnotationColors Source code
pheatmapArgs Source code
pheatmapColor Source code
plasma Man page
plotCorrelationHeatmap Man page Man page
plotCorrelationHeatmap,SummarizedExperiment-method Man page
plotCorrelationHeatmap,dgCMatrix-method Man page
plotCorrelationHeatmap,dgTMatrix-method Man page
plotCorrelationHeatmap,matrix-method Man page
plotDot Man page
plotGene Man page
plotHeatmap Man page Man page
plotHeatmap,SummarizedExperiment-method Man page
plotHeatmap,dgCMatrix-method Man page
plotHeatmap,dgTMatrix-method Man page
plotHeatmap,matrix-method Man page
plotQC Man page
plotQuantileHeatmap Man page Man page
plotQuantileHeatmap,SummarizedExperiment-method Man page
plotQuantileHeatmap,dgCMatrix-method Man page
plotQuantileHeatmap,dgTMatrix-method Man page
plotQuantileHeatmap,matrix-method Man page
plotViolin Man page
prepareSampleData Man page Source code
prepareSampleMetadata Man page Source code
prepareSummarizedExperiment Man page Source code
prepareTemplate Man page Source code
projectDirPattern Man page
pull Man page
quantileBreaks Source code
readDataVersions Man page Source code
readLog Man page Source code
readLogFile Man page Source code
readProgramVersions Man page Source code
readSampleData Man page Source code
readSampleMetadataFile Man page Source code
readTx2gene Man page Source code
readYAML Man page
readYAMLSample Source code
readYAMLSampleData Man page Source code
readYAMLSampleMetrics Man page Source code
reexports Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page
returnSampleData Source code
rse_bcb Man page
rse_dds Man page
sampleData Man page Man page
sampleData,SummarizedExperiment-method Man page
sampleData<- Man page
sampleData<-,SummarizedExperiment,DataFrame-method Man page
sampleData<-,SummarizedExperiment,data.frame-method Man page
sampleDirs Man page Source code
sampleMetadata Man page Source code
sampleMetadata<- Man page
sampleNames Man page
sampleNames,SummarizedExperiment-method Man page
sampleYAML Man page Source code
sampleYAMLMetadata Man page Source code
sampleYAMLMetrics Man page Source code
sanitizeSampleData Man page Source code
scale_color_viridis Man page
scale_colour_viridis Man page
scale_fill_viridis Man page
selectSamples Man page Man page
selectSamples,SummarizedExperiment-method Man page
separatorBar Man page
tibble Man page
uniteInterestingGroups Man page Man page
uniteInterestingGroups,DataFrame-method Man page
uniteInterestingGroups,data.frame-method Man page
uniteInterestingGroups,tbl_df-method Man page
updateMessage Man page
viridis Man page
hbc/bcbioBase documentation built on July 10, 2018, 3:50 p.m.