Man pages for hbc/bcbioBase
bcbio Base Functions

AllGenericsS4 Generics
assertAssert Checks
assertFormalAnnotationColAssert Formal Annotation Column
assertFormalInterestingGroupsInteresting Groups Formal Assert Check
bcbioBase-packagebcbioBase
coerceMethods for Coercing an Object to a Class
convertGenesToSymbolsConvert Genes to Symbols
copyToDropboxCopy Files to Dropbox
countsCounts
deprecatedDefunct or Deprecated Functions
flatFilesFlat Files from S4 Object
gene2symbolGene to Symbol Mappings
generalGeneral Arguments
ggplot2ggplot2 Functions
interestingGroupsInteresting Groups
labelSepPlot Label Separator
lanePatternLane Grep Pattern
metadataBlacklistMetadata Blacklist
minimalSampleDataMinimal Sample Data
plotCorrelationHeatmapPlot Correlation Heatmap
plotHeatmapPlot Heatmap
plotQuantileHeatmapPlot Heatmap with Quantile Breaks
prepareSummarizedExperimentPrepare Summarized Experiment
prepareTemplatePrepare R Markdown Template File
projectDirPatternProject Directory Grep Pattern
readDataVersionsRead Data Versions
readLogRead Log File
readProgramVersionsRead Program Versions
readSampleDataRead Sample Metadata
readTx2geneTranscript to Gene Annotations
readYAMLRead YAML Sample Data and Metrics
reexportsObjects exported from other packages
rse_bcb'RangedSummarizedExperiment' Coerced from 'bcbioRNASeq'
rse_dds'RangedSummarizedExperiment' Coerced from 'DESeqDataSet'
sampleDataSample Data
sampleDirsSample Directories
sampleNamesSample Names
sanitizeSampleDataSanitize Sample Data
selectSamplesSelect Samples
separatorBarSeparator Bar
uniteInterestingGroupsUnite Interesting Groups
updateMessageUpdate Message
hbc/bcbioBase documentation built on June 7, 2018, 8:07 a.m.