Files in hbc/hbcABC
Rmarkdown templates for bioinformatic analysis
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/funding.R
R/hello.R
R/helpers.R
README.md
docs/LICENSE-text.html
docs/articles/general_start.html
docs/articles/how_to_add_templates.html
docs/articles/how_to_contribute.html
docs/articles/index.html
docs/articles/list_of_templates.html
docs/articles/qc-tutorial.html
docs/articles/singlecell-tutorial.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/funding.html
docs/reference/index.html
hbcABC.Rproj
inst/rmarkdown/Rscripts/singlecell/clustering_seurat.R
inst/rmarkdown/Rscripts/singlecell/clustering_seurat_subset.R
inst/rmarkdown/Rscripts/singlecell/de_with_zinbwave.R
inst/rmarkdown/Rscripts/singlecell/from_bcb_to_seurat.R
inst/rmarkdown/Rscripts/singlecell/from_bcbio_to_singlecell.R
inst/rmarkdown/Rscripts/singlecell/markers_seurat.R
inst/rmarkdown/Rscripts/singlecell/quick_pipeline.R
inst/rmarkdown/templates/chipseq/skeleton/skeleton.Rmd
inst/rmarkdown/templates/chipseq/template.yaml
inst/rmarkdown/templates/complex_differential_expression/skeleton/skeleton.Rmd
inst/rmarkdown/templates/complex_differential_expression/template.yaml
inst/rmarkdown/templates/differential_expression_sleuth/skeleton/skeleton.Rmd
inst/rmarkdown/templates/differential_expression_sleuth/template.yaml
inst/rmarkdown/templates/legacy_fastrna_differential_expression/skeleton/deseq2-de.Rmd
inst/rmarkdown/templates/legacy_fastrna_differential_expression/template.yaml
inst/rmarkdown/templates/minimal_rmd/skeleton/skeleton.Rmd
inst/rmarkdown/templates/minimal_rmd/template.yaml
inst/rmarkdown/templates/nanostring_qc/skeleton/skeleton.Rmd
inst/rmarkdown/templates/nanostring_qc/template.yaml
inst/rmarkdown/templates/seurat_clustering_single_cell/skeleton/bibliography.bib
inst/rmarkdown/templates/seurat_clustering_single_cell/skeleton/skeleton.Rmd
inst/rmarkdown/templates/seurat_clustering_single_cell/template.yaml
inst/rmarkdown/templates/seurat_markers_single_cell/skeleton/skeleton.Rmd
inst/rmarkdown/templates/seurat_markers_single_cell/template.yaml
inst/rmarkdown/templates/simple_qc_rnaseq/skeleton/skeleton.Rmd
inst/rmarkdown/templates/simple_qc_rnaseq/template.yaml
inst/rmarkdown/templates/simple_qc_single_cell/skeleton/skeleton.rmd
inst/rmarkdown/templates/simple_qc_single_cell/template.yaml
man/copy_script.Rd
man/funding.Rd
man/show_scripts.Rd
vignettes/general_start.rmd
vignettes/how_to_contribute.Rmd
vignettes/list_of_templates.Rmd
vignettes/single_cell_rnaseq/README.md
vignettes/singlecell-tutorial.rmd
