refresh.combined_tree: Refreshes the phylogenetic tree dataset

In healyke/FestR: Stable Isotope Discrimination Estimation using R

Description

Internal utility function for refreshing the combined_trees dataset (not exported) This function rapidly updates the combined_trees.rda file once one updates the .tre files.

Usage

refresh.combined_tree(data = c("3firstFritzTrees.tre",
  "3firstJetzTrees.tre"), sample = 2, root.age = 250)

Arguments

data	A character vector file containing names of the *.tre files to be combined.
sample	an integer defining the number of trees to create. Passed to mulTree::tree.bind
root.age	a numeric value used to join two trees. Passed to mulTree::tree.bind

Value

Saves the updated file to ../data/combined_trees.rda for use within the package

Author(s)

Thomas Guillerme

healyke/FestR documentation built on April 19, 2020, 7:15 p.m.