fortify: Convert tbl_tree to plottable data.frame

In heavywatal/cellpoptime: Analyze and visualize phylogenetic tree of cell population

Description

Convert tbl_tree to plottable data.frame

Usage

fortify_cellpop(model, data, ..., method = "fdr", q = 0.05)

ggtree_fortify(data, ...)

layout_rect(data, ladderize = TRUE, ...)

## S3 method for class 'list'
layout_rect(data, ladderize = TRUE, ...)

## S3 method for class 'data.frame'
layout_rect(data, ladderize = TRUE, ...)

Arguments

model	output of scale_branches()
data	tbl_tree
...	passed to layout_rect or ggtree::fortify.
method	passed to p.adjust()
q	threshold
ladderize	Use ape::ladderize or not.

Details

fortify_cellpop prepares plottable data.frame.

ggtree_fortify is a wrapper of ggtree::fortify.

layout_rect is a simplified version of ggtree::fortify, whose output lacks "branch" and "angle" columns.

heavywatal/cellpoptime documentation built on May 5, 2021, 7:16 p.m.