ms: Functions to run ms and parse ms-like output

In heavywatal/rwtl: Personal R package

Functions to run ms and parse ms-like output

Description

run_ms() executes ms as an external program.

parse_ms() transforms ms-like output into a list of matrices.

split_ms() splits ms-like output by replications.

as_int_matrix() converts a string vector into an integer matrix.

Usage

run_ms(nsam = 4L, nreps = 2L, theta = 5)

parse_ms(msout, byrow = FALSE)

split_ms(msout)

as_int_matrix(samples, byrow = FALSE)

Arguments

nsam	number of samples
nreps	number of repeats
theta	population mutation rate
msout	string vector of ms-like output
byrow	logical value passed to matrix
samples	string vector

Value

run_ms() returns a string vector

parse_ms() returns a list of integer matrices

split_ms() returns a list of string vector

as_int_matrix() returns an integer matrix

heavywatal/rwtl documentation built on April 2, 2024, 6:08 p.m.