BUPID Top-Down is a suite of tools designed to analyze top-down proteomics data.
A bupid
object is an S4 class container that stores the results
of a BUPID Top-Down run and post-processing utilities.
scan
Scan header information
decon
Peak lists
param
Parameters used for each peak list
prot
Protein candidates selected
search
Database search results
tag
Sequence tags identified
fit
Fragment ions identified
xlink
Peak lists with crosslinked ions identified
xlpep
Crosslinked ions identified
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