fragment.matched: Fragment assignment tables

Description Usage Arguments Value Examples

Description

These functions generate tables using information from the fragment assignment module.

fragment.matched.ions generates a matrix containing detailed information about the assigned fragments.

fragment.matched.peaks generates the assigned fragments with matches grouped by matched peak.

fragment.matched.clusters generates a matrix of assignments along with their original m/z and charge state values as seen in the raw spectra.

Usage

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Arguments

data

output from read.bupid

format

decides the return type: list or matrix

Value

Returns the assignment information table.

Returns the matrix of assignments.

Returns the list or matrix of assignments.

Examples

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## Not run: 
server <- "http://bupid.bumc.bu.edu/cgi-bin/get_results.cgi"
infile <- "key=WBNqTswT5DPg3aDO&ID=320&date=20150309"
data <- read.bupid(url=paste(server,infile,sep="?"))
fragment.matched.ions(data)
fragment.matched.peaks(data)
fragment.matched.clusters(data)

## End(Not run)

heckendorfc/BTDR documentation built on April 28, 2018, 10:12 a.m.