plotOrnitho: Plot Ornitho Data

In heibl/rornitho: Functions for Visualisation of Ornitho Bird Observations

Description

This function calls a series of plotting functions to generate a multi-facetted plot of ornitho monitoring data.

Usage

plotOrnitho(x, map, show.hidden = FALSE, rasterize = 100, 
    raster.model = raster.model, from = "Jan", to = "Dec",
    col = c("yellow", "red"), gridcol = "grey25", 
    missing.obs, alt.background,
    reporter = TRUE)

Arguments

x	an object of class ornithoSpec.
map	an object of class ornithoMap.
show.hidden	logical, indicating if restricted ("hidden") data should be shown, defaults to FALSE.
rasterize	a numeric giving a threshold number of observations. The coordinates of species that have rasterize or less observations are shown as points. If more observations are available, an index of abundance per grid cell according to a raster.model is calculated and displayed.
from, to	a character string giving one of "Jan", "Feb", "Mar", "Apr", "May", "Jun", "Jul", "Aug", "Sep", "Oct", "Nov", or "Dec" (see plotOrnithoPheno for details).
raster.model	a character string that gives the raster model that will be applied for species with more than rasterize observations; the choices are "sumObs", "sumInd", and "maxInd" (see plotOrnithoRaster).
col	vector of any of the three kinds of R color specifications, i.e., either a color name (as listed by colors()), a hexadecimal string of the form "#rrggbb" or "#rrggbbaa" (see rgb), or a positive integer i meaning palette()[i]. The given colors are used to interpolate a nine-level color palette for plotting.
gridcol	a character string giving the color of the grid for plotting; setting gridcol = NA suppresses the plotting of the grid.
missing.obs	an object of class SpatialPoints that gives the coordinates of the centroids of those grid cells that have not been sampled and that will be marked by a cross.
alt.background	numeric, a vector of integers that are representative for the distribution of the altitude of the samples. Used to compare the altitudinal distribution of a species samples to the altitudinal distribution sampled.
reporter	logical, indicating if the name of the reporter should be included in the tables summarizing the observations on the second page of each species account.

Author(s)

Christoph Heibl

See Also

ornithoPDF

heibl/rornitho documentation built on May 17, 2019, 3:22 p.m.