aacids | properties of amino acids |
alphabet | alphabet polygon data |
calcInformation | Compute shannon information based on position and treatment |
createPolygons | Create a data set of polygons for a set of letters from a... |
determineOrder | Determine order in which to pass through a set of points |
fortify | Convert image matrix to a data frame |
geom_logo | Sequence logo plots. |
getOutline | Determine boundary between foreground and background in an... |
ggfortify | Convert sequence data to a format suitable for logo plots |
identifyParts | Identify different parts of a polygon |
letterObject | Convert a text element into an R object |
letterToPolygon | Convert an image file to a polygon |
logo | Logo plot |
mainPlusIslands | Set the orientation of a polygon |
point_line_dist | Distance between point and line |
position_logo | Logo positioning for overlapping objects on top of one... |
sequences | peptide sequence data |
simplifyPolygon | Douglas-Peucker algorithm adjusted fo polyons |
simplify_rec | Douglas Pecker algorithm for line thinning |
splitSequence | Reshape data set according to elements in sequences |
stat_logo | Calculation of all pieces necessary to plot a logo sequence... |
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