plotSurfaceMixed: plotSurfaceMixed

In heilandd/SPATAwrappers: What the Package Does (One Line, Title Case)

plotSurfaceMixed

Description

Plot multiple parameter from the feature data.frame

Usage

plotSurfaceMixed(
  object,
  Mixed,
  mixed.colors,
  smooth = T,
  normalize = F,
  smooth_span = NULL,
  pt_size = 2.5,
  pt_alpha = T,
  display_image = F
)

Arguments

object	SPATA2 object
Mixed	Character value. Specifies the order and features that should be vizualized
mixed.colors	colors from the palettes: colourvalues::color_palettes()
smooth	Logical. If TRUE, a loess fit is used to smooth the values.
smooth_span	Numeric value. Controls the degree of smoothing. Given to argument span of stats::loess().
pt_size	Numeric value. Specifies the size of all points.
pt_alpha	Logical. If TRUE, the feature will be used as alpha
display_image	Logical. If set to TRUE the histology image of the specified sample is displayed underneath the plot.

Author(s)

Dieter Henrik Heiland

heilandd/SPATAwrappers documentation built on Oct. 2, 2022, 1:40 p.m.