filter_network: Filter the edges table to nodes above a given abundance ratio...

In heimannch/abcnet: Compute scores of an abundant-concordant cytokine network

Description

Filter the edges table to nodes above a given abundance ratio and edges above a given concordance level.

Usage

filter_network(nodes_scores, edges_scores, abundance, concordance)

Arguments

nodes_scores	A dataframe with abundance score for all nodes across all groups. Use the output dataframe from get_abundance_table function.
edges_scores	A dataframe with the concordance score for each edge in the scaffold. Use the output dataframe from compute_concordance function.
abundance	The abundance threshold to filter nodes. Should be between 0 and 1.
concordance	The concordance threshold to filter edges. Only positive values.

Value

A dataframe with all nodes with UpBinRatio above the abundance threshold and edges with ratioScores above the concordance threshold.

heimannch/abcnet documentation built on Jan. 2, 2021, 5:06 p.m.