parse_taxa: Parsing scientific names for a species
In helixcn/herblabel: Making Labels for Herbarium Specimens in RTF and More
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Parsing scientif names to FAMILY,GENUS, SPECIES, AUTHOR_OF_SPECIES, INFRASPECIFIC_RANK, INFRASPECIFIC_EPITHET, AUTHOR_OF_INFRASPECIFIC_RANK
Usage
1
parse_taxa(taxa)
Arguments
taxa
A string representing scientific name
Details
This functions finds the gaps in the scientific name, and parse the name to GENUS, SPECIES, AUTHOR_OF_SPECIES, INFRASPECIFIC_RANK, INFRASPECIFIC_EPITHET, AUTHOR_OF_INFRASPECIFIC_RANK. There may be errors in parsing scientific name with "f.".
Value
A dataframe containing the following columns TAXON_PARSED, GENUS_PARSED, SPECIES_PARSED, AUTHOR_OF_SPECIES_PARSED, INFRASPECIFIC_RANK_PARSED, INFRASPECIFIC_EPITHET_PARSED, AUTHOR_OF_INFRASPECIFIC_RANK_PARSED
Author(s)
Jinlong Zhang jinlongzhang01@gmail.com
See Also
See Also as fill_dwc for the application of this function.
Examples
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parse_taxa("Acer")
parse_taxa("Acer caudatifolium Hayata")
parse_taxa("Acer caudatifolium")
parse_taxa("Acer sp.")
parse_taxa("Acer caudatum Wall. var. multiserratum (Maxim.) Rehd.")
parse_taxa("Acer caudatum var. multiserratum (Maxim.) Rehd.")
parse_taxa("Acer caudatum Wall. var. multiserratum")
parse_taxa("Acer caudatum var. multiserratum")
parse_taxa("Acer caesium Wall. ex Brandis subsp. giraldii (Pax) E. Murr.")
parse_taxa("Acer caesium subsp. giraldii (Pax) E. Murr.")
parse_taxa("Acer caesium Wall. ex Brandis subsp. giraldii")
parse_taxa("Acer caesium subsp. giraldii")
############# Not a real species #############
tax <- " Acanthodium furcatum ( L. f. ) Nees "
parse_taxa(tax)
taxon <- " Acanthodium furcatum ( L. f. ) Nees "
parse_taxa(taxon)
tax <- "Acanthus ebracteatus var. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX var. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX f. subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu f. "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX f. subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthodium furcatum f. variagata Nees "
parse_taxa(tax)
tax <- "Acanthodium furcatum (L. f. ) Nees "
parse_taxa(tax)
tax <- "Acanthus ebracteatus subsp. ebracteatus"
parse_taxa(tax)
helixcn/herblabel documentation built on March 31, 2021, 5:45 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Parsing scientif names to FAMILY,GENUS, SPECIES, AUTHOR_OF_SPECIES, INFRASPECIFIC_RANK, INFRASPECIFIC_EPITHET, AUTHOR_OF_INFRASPECIFIC_RANK
Usage
1 | parse_taxa(taxa)
|
Arguments
taxa |
A string representing scientific name |
Details
This functions finds the gaps in the scientific name, and parse the name to GENUS, SPECIES, AUTHOR_OF_SPECIES, INFRASPECIFIC_RANK, INFRASPECIFIC_EPITHET, AUTHOR_OF_INFRASPECIFIC_RANK. There may be errors in parsing scientific name with "f.".
Value
A dataframe containing the following columns TAXON_PARSED, GENUS_PARSED, SPECIES_PARSED, AUTHOR_OF_SPECIES_PARSED, INFRASPECIFIC_RANK_PARSED, INFRASPECIFIC_EPITHET_PARSED, AUTHOR_OF_INFRASPECIFIC_RANK_PARSED
Author(s)
Jinlong Zhang jinlongzhang01@gmail.com
See Also
See Also as fill_dwc for the application of this function.
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 | parse_taxa("Acer")
parse_taxa("Acer caudatifolium Hayata")
parse_taxa("Acer caudatifolium")
parse_taxa("Acer sp.")
parse_taxa("Acer caudatum Wall. var. multiserratum (Maxim.) Rehd.")
parse_taxa("Acer caudatum var. multiserratum (Maxim.) Rehd.")
parse_taxa("Acer caudatum Wall. var. multiserratum")
parse_taxa("Acer caudatum var. multiserratum")
parse_taxa("Acer caesium Wall. ex Brandis subsp. giraldii (Pax) E. Murr.")
parse_taxa("Acer caesium subsp. giraldii (Pax) E. Murr.")
parse_taxa("Acer caesium Wall. ex Brandis subsp. giraldii")
parse_taxa("Acer caesium subsp. giraldii")
############# Not a real species #############
tax <- " Acanthodium furcatum ( L. f. ) Nees "
parse_taxa(tax)
taxon <- " Acanthodium furcatum ( L. f. ) Nees "
parse_taxa(taxon)
tax <- "Acanthus ebracteatus var. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX var. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX f. subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu f. "
parse_taxa(tax)
tax <- "Acanthus ebracteatus XXXX f. subsp. xiamenensis (R.T.Zhang) C.Y.Wu & C.C.Hu "
parse_taxa(tax)
tax <- "Acanthodium furcatum f. variagata Nees "
parse_taxa(tax)
tax <- "Acanthodium furcatum (L. f. ) Nees "
parse_taxa(tax)
tax <- "Acanthus ebracteatus subsp. ebracteatus"
parse_taxa(tax)
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