Man pages for helixcn/seqRFLP
Simulation and visualization of restriction enzyme cutting pattern from DNA sequences.
| as.fasta | Coerce "phy" or "nex" objects to fasta format. |
| clipprobe | Finding the sequences that could be clipped given two... |
| ConvFas | Convert files to fasta format |
| dataframe2fas | Convert dataframe to fasta format |
| enzCut | Restriction enzyme cutting pattern |
| enzdata | The restriction enzyme datasets. |
| file.cat | Copy or concatenate files to one. |
| fil.fas | Fasta data example. |
| fil.nxs | Internal nexus data. |
| fil.phy | Internal phylip format data |
| findprobe | Find probes matching sites |
| frag.dat | Reports for simulated RFLP cutting pattern |
| gnames.fas | Get the names of sequences from fasta objects. |
| plotenz | Plotting the simulated RFLP or TRFLP pattern |
| raw2Fas | Read and converting raw DNA files to fasta format. |
| read.fasta | Read fasta file |
| read.nxs | Read nexus file |
| read.phy | Read phylip file |
| rename.fas | Change the sequence names of fasta objects. |
| revComp | Reverse complement sequence |
| selEnz | Selecting restriction enzyme |
| seqRFLP-package | Simulation and visualization of Restriction Fragment Length... |
| write.fasta | Write fasta format object to file |
