SPecies Association Analysis

add.col | Add one column from A to B, according to one column of common... |

data2mat | Convert species list data to species matrix |

datasample | community matrix example |

deg2dec | Degree to decimal |

dist2list | Convert distance matrix to pairwised list |

freq.calc | Species relative frequency |

geodist | Hight precision Great circle distance between two places |

lab.mat | Convert vector of XY labels to label matrix |

lgeodist | Low precision Great circle distance between two places |

list2dist | Convert pairwise list to distance matrix |

niche.overlap | Niche overlap between each pair of species |

niche.overlap.boot | Boostrap of niche overlap |

niche.overlap.boot.pair | Niche overlap boostrap utility function |

niche.overlap.pair | Niche overlap between one pair of species. |

niche.width | Niche width |

plotlowertri | Plotting lower semi matrix |

plotnetwork | Correlation network plot |

spaa-package | SPecies Association Analysis |

sp.assoc | Total species association |

splist | species list used in function add.col() |

sp.pair | Species association between each pair of species |

sub.sp.matrix | Subset species matrix according to relative frequency |

testdata | Example Data |

turnover | Calculating species turnover |

XYname | Generating vector of XY labels |

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