Man pages for helloicyvodka/ggVITA
An R package for VIsualization and annotation of Tree Alignment.
| Bin2Dec | Transform binary sequence to decimal sequence |
| Bin_get_parent | Get the binary sequence of parent |
| Dec2Bin | Transform a decimal number to a binary sequence of character |
| DELTA | Calculate DELTA score |
| DrawScoreMatrix | Draw score matrix |
| DrawScoreMatrix2 | Draw score matrix |
| Find.addNode | Find the missing nodes, including leaves and internal nodes. |
| Find.missed.sister | Find missed sister in all lineaged tree. |
| Find.root | Find the root from allLin |
| Find.root.from.tips | Find root from tips |
| Find.tips | Find tips from all lineage of complete tree. |
| Find.tree.from.tips | Rebuild the complete tree from tips (leaves) lineage. |
| Find.unpaired.tip | Find unpaired tips of an incompleted tree all lineage. |
| ggvita | Show the basic structure of alignment results |
| ggvita_add | Add layer to ggvita |
| ggvita.classic | Show alignment results in classical way: including expression... |
| LN_to_Bin | Transform Lineage Name to Lineage |
| Make.tree.complete | Make an incompleted tree completed |
| print.ggvita | Print ggvita objects |
| readal | Read in the result of DELTA for analysis |
| readal.almg | readal.almg |
| readal.alml | readal.alml |
| readal.epic | Read in a gene expression level file on the tree downloaded... |
| ReLin | Renew the incomplete tree leave lineages |
| sort_Bin_by_Dec | Sort the vector of binary sequences increasingly according to... |
| stat_epic | stat_EPIC |
| stat_prune | stat_prune |
| theme_al | A theme to add legend on both sides |
| write.alm | Write alm data.frame to file. |
