ggvita.classic: Show alignment results in classical way: including expression...

In helloicyvodka/ggVITA: An R package for VIsualization and annotation of Tree Alignment.

Description

Show alignment results in classical way: including expression and prune nodes

Usage

ggvita.classic(alml_list, result.order, expr_file, size, tip_size,
  values = c(0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8)/0.8,
  colors = rainbow(11)[1:9], mc.cores = 1, ...)

Arguments

alml_list	the variable created from readal
result.order	the order of result you want to show
size	size of prune nodes and expression band width
tip_size	size of tips
values	the values for data distrbution adjustment.See scale_gradientn's values requirement
colors	color gradinets. See scale_gradientn's color requirement
mc.cores	This function is very slow. Suggest to use a few cores.
...	same as ggtree parameters (ggtree::ggtree())

Value

a basic tree alignment structure

helloicyvodka/ggVITA documentation built on May 28, 2019, 8:55 p.m.