findConservityFromS: This function finds the highest frequency of nucleotide in...
In hezijin/conservedPos: Use conservedPos find important conserved sites for small target region
Description
Usage
Arguments
Value
Examples
Description
This function finds the highest frequency of nucleotide in input string.
Usage
1
Arguments
str
A string containing character nucleotides
Value
Return a numeric value for highest frequency
Examples
1
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# Example 1: find the highest letter frequency in a string
str <- "AADDDCCEEEE"
freq <- findConservityFromS(str)
freq # 0.363636...
# Example 2: find the highest frequency of nucleotide from a string of
# nucleotide generated by createPosVec()
data(testSeqShort)
position1Vec <- createPosVec(testSeqShort, 1)
freq <- findConservityFromS(position1Vec)
freq # 0.66666...
hezijin/conservedPos documentation built on Jan. 1, 2021, 3:18 a.m.
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Description Usage Arguments Value Examples
Description
This function finds the highest frequency of nucleotide in input string.
Usage
1 |
Arguments
str |
A string containing character nucleotides |
Value
Return a numeric value for highest frequency
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | # Example 1: find the highest letter frequency in a string
str <- "AADDDCCEEEE"
freq <- findConservityFromS(str)
freq # 0.363636...
# Example 2: find the highest frequency of nucleotide from a string of
# nucleotide generated by createPosVec()
data(testSeqShort)
position1Vec <- createPosVec(testSeqShort, 1)
freq <- findConservityFromS(position1Vec)
freq # 0.66666...
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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