findMaxLen: This function finds the max length of sequence for input...
In hezijin/conservedPos: Use conservedPos find important conserved sites for small target region
Description
Usage
Arguments
Value
Examples
Description
This function finds the max length of sequence for input sequence set
Usage
1
findMaxLen(seqSet)
Arguments
seqSet
seqSet A set of aligned sequence read from fasta file
Value
A numeric value of the max length of sequence for seqSet
Examples
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# Example 1: find the max length of a sequence set retrieved from raw data
findpath <- system.file("extdata", "sampleSeq3.txt", package = "conservedPos")
rawSeq <- Biostrings::readBStringSet(findpath,"fasta")
maxL <- findMaxLen(rawSeq)
maxL # 140
# Example 2: find the max length of a sequence set retrieved from data
data(testSeqShort)
testSeq <- testSeqShort
maxL <- findMaxLen(testSeq)
maxL # 37
hezijin/conservedPos documentation built on Jan. 1, 2021, 3:18 a.m.
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Description Usage Arguments Value Examples
Description
This function finds the max length of sequence for input sequence set
Usage
1 | findMaxLen(seqSet)
|
Arguments
seqSet |
seqSet A set of aligned sequence read from fasta file |
Value
A numeric value of the max length of sequence for seqSet
Examples
1 2 3 4 5 6 7 8 9 10 11 | # Example 1: find the max length of a sequence set retrieved from raw data
findpath <- system.file("extdata", "sampleSeq3.txt", package = "conservedPos")
rawSeq <- Biostrings::readBStringSet(findpath,"fasta")
maxL <- findMaxLen(rawSeq)
maxL # 140
# Example 2: find the max length of a sequence set retrieved from data
data(testSeqShort)
testSeq <- testSeqShort
maxL <- findMaxLen(testSeq)
maxL # 37
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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