mcmcPlots: mcmcPlots

In hferg/BTprocessR: A set of tools to help with the interpretation and analysis of the output of BayesTraits MCMC analyses.

Description

Plots 4 MCMC diagnostics for a parameter

Usage

mcmcPlots(logfile, parameters = NULL, ...)

Arguments

logfile	Either an object of class "bt_post", or the name of the logfile of the analysis of interest.
parameters	A vector of names of parameters to show diagnostic plots for. If NULL (default) then all parameters are used (depending on the analysis some of these may be nonsensical).
...	Additional arguments passed to loadPosterior

Examples

paramDiagnostic("cool-data.log", "Lh")
params <- getParams("cool-data.log")
paramDiagnostic("cool-data.log", params, type = "trace", cols = 3)

hferg/BTprocessR documentation built on March 8, 2020, 11:45 a.m.