btmcmc | btmcmc |
BTRTools | A package that makes it easier to process and analyse the... |
compareStones | compareStones |
compPosts | compPosts |
createCounts | createCounts Creates the counts table for the rjpp. |
findRateShifts | findRateShifts |
findShifts | findShifts |
findTransShifts | findTransShifts |
getDescs | getDescs |
getMRCAbtr | getMRCAbtr |
getParams | getParams |
getPL | getPL Gets the path length from the root to the position of a... |
getPostStats | getPostStats |
getStones | getStones |
getTaxa | getTaxa |
getTipNames | getTipNames |
ggAutoCor | ggAutoCor |
ggDens | ggDens |
ggHist | ggHist |
ggRunmean | ggRunmean |
ggTrace | ggTrace |
isDefined | is.defined |
loadRJ | loadRJ |
localDelta | localDelta |
localEB | localEB |
localKappa | localKappa |
localLambda | localLambda |
localRate | localRate |
makeTrans | makeTrans |
meanBranches | meanbranches |
modeStat | modeStat Calculate the mode. |
multiplot | Multiple plot function |
multiplyNodes | multiplyNodes Works out the cumulative effect of linear... |
paramDiagnostic | paramDiagnostic |
paramLh | paramLh |
plotPhylo | plotPhylo |
plotPosts | plotPosts |
plotShifts | plotShifts |
rateShifts | rateShifts Generates the edge colours to colour edges by... |
rjParamCount | rjParamCount |
rjpp | rjpp |
scalarSearch | scalarSearch Searches through the posterior of an RJ... |
smartBind | smartBind |
summariseModelString | summariseModelString |
transShifts | transShifts Generates the node labels, edge.colours and... |
treeTrans | treeTrans |
viewLogfile | viewLogfile |
zeroTest | zeroTest |
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