compPosts: compPosts

In hferg/btrtools:

Description

Compares histograms of one or more parameters from the same output file, or one parameter from one or more output files.

Usage

compPosts(logs, pars, thinning = 1, burnin = 0, alpha = 0.5,
  fontsize = 3)

Arguments

logs	The name of the trait data file on which BayesTraits was run, or a vector of >1 names if comparing between >1 logs.
pars	A vector containing the names of two parameters to be compared. Must be a single parameter if comparing between two logs. Can be subsetted from the output of getParams().
thinning	Thinning parameter for the posterior - defaults to 1 (all samples). 2 uses every second sample, 3 every third and so on.
burnin	The number of generations to remove from the start of the chain as burnin.

Examples

plotPosterior(cool-data.txt, c("Lh", "Alpha 1"))
plotPosterior(cool-data.txt, params[c(1:2)])

hferg/btrtools documentation built on May 17, 2019, 3:56 p.m.