API for hhabra/metabCombiner
Method for Combining LC-MS Metabolomics Feature Measurements
| Global functions | |
|---|---|
| .onLoad | Source code |
| .onUnload | Source code |
| QData | Man page |
| QData,metabCombiner-method | Man page |
| adductData | Man page |
| adductData,metabCombiner-method | Man page |
| adjustData | Man page Source code |
| batchCombine | Man page Source code |
| calcScores | Man page Source code |
| calcScoresParam | Man page Source code |
| calculateRanks | Source code |
| cat.strings | Source code |
| check_anchors_pars | Source code |
| check_combine_pars | Source code |
| check_fit_pars | Source code |
| check_lblrows_pars | Source code |
| check_score_pars | Source code |
| combineData | Man page |
| combineData,metabCombiner-method | Man page |
| combine_X_Y | Source code |
| combine_X_y | Source code |
| combine_default | Source code |
| combine_x_Y | Source code |
| combinedTable | Man page |
| combinedTable,metabCombiner-method | Man page |
| combinerCheck | Man page Source code |
| combinerNames | Source code |
| compare_strings | Source code |
| crossValFit | Man page Source code |
| datasets | Man page |
| datasets,metabCombiner-method | Man page |
| detect | Source code |
| detectFields | Man page Source code |
| detectSamples | Source code |
| drop.dup.columns | Source code |
| duplicate.pars | Source code |
| duplicateHandler | Source code |
| evaluateParams | Man page Source code |
| featData | Man page |
| featData,metabCombiner-method | Man page |
| fill_combinedTable | Source code |
| fill_featData | Source code |
| filterAnchors | Man page Source code |
| filterDuplicates | Source code |
| filterRT | Man page Source code |
| filtered | Man page |
| filtered,metabData-method | Man page |
| findDuplicates | Source code |
| find_lost_features | Source code |
| fit_gam | Man page Source code |
| fit_loess | Man page Source code |
| fitgamParam | Man page Source code |
| fitloessParam | Man page Source code |
| flagOutliers | Source code |
| formCombinedTable | Source code |
| formLabeledTable | Source code |
| form_dataset | Source code |
| form_featData | Source code |
| form_idtable | Source code |
| form_means | Source code |
| form_tables | Source code |
| formatAnchors | Source code |
| getAnchors | Man page |
| getAnchors,metabCombiner-method | Man page |
| getCoefficients | Man page |
| getCoefficients,metabCombiner-method | Man page |
| getData | Man page |
| getData,metabData-method | Man page |
| getExtra | Man page |
| getExtra,metabCombiner-method | Man page |
| getExtra,metabData-method | Man page |
| getModel | Man page |
| getModel,metabCombiner-method | Man page |
| getSamples | Man page |
| getSamples,metabCombiner-method | Man page |
| getSamples,metabData-method | Man page |
| getStats | Man page |
| getStats,metabCombiner-method | Man page |
| getStats,metabData-method | Man page |
| get_labels | Source code |
| groupDuplicates | Source code |
| hinge | Source code |
| idData | Man page |
| idData,metabCombiner-method | Man page |
| identityAnchorSelection | Man page Source code |
| ignore_brackets | Source code |
| isCombinedTable | Man page Source code |
| isMetabCombiner | Man page Source code |
| isMetabData | Man page Source code |
| iterativeAnchorSelection | Man page Source code |
| labelRows | Man page Source code |
| labelRowsParam | Man page Source code |
| mergeDuplicates | Source code |
| merge_duplicate_idadd | Source code |
| merge_duplicate_mzrtQ | Source code |
| merge_duplicate_values | Source code |
| metabBatches | Man page |
| metabCombine | Man page Source code |
| metabCombiner | Man page Source code |
| metabCombiner-class | Man page |
| metabData | Man page Source code |
| metabData-class | Man page |
| mismatchScore | Source code |
| mismatchfind | Source code |
| mzData | Man page |
| mzData,metabCombiner-method | Man page |
| mzGroup | Man page Source code |
| mzdiff | Source code |
| nonmatched | Man page |
| nonmatched,metabCombiner-method | Man page |
| objective | Man page Source code |
| opts.duplicate | Man page Source code |
| plasma20 | Man page |
| plasma30 | Man page |
| plot,metabCombiner,ANY-method | Man page |
| plot_fit | Man page Source code |
| prepare_fields_values | Source code |
| readData | Source code |
| reduceTable | Man page Source code |
| reduceTableParam | Man page Source code |
| resolveRows | Man page Source code |
| rmbrackets | Source code |
| rtData | Man page |
| rtData,metabCombiner-method | Man page |
| sampleData | Source code |
| scorePairs | Man page Source code |
| selectAnchors | Man page Source code |
| selectAnchorsParam | Man page Source code |
| selectColumn | Source code |
| selectMZ | Source code |
| selectQ | Source code |
| selectRT | Source code |
| summaryCounts | Source code |
| updateCombiner | Source code |
| updateTables | Man page Source code |
| write2file | Man page Source code |
| x | Man page |
| x,metabCombiner-method | Man page |
| xy | Man page |
| xy,metabCombiner-method | Man page |
| y | Man page |
| y,metabCombiner-method | Man page |
