getStats: Get Object Statistics

In hhabra/metabCombiner: Method for Combining LC-MS Metabolomics Feature Measurements

Get Object Statistics

Description

Prints out a list of object-specific statistics for both metabCombiner and metabData objects

Usage

getStats(object)

## S4 method for signature 'metabCombiner'
getStats(object)

## S4 method for signature 'metabData'
getStats(object)

Arguments

object

metabCombiner or metabData object

Value

list of object-specific statistics

Methods (by class)

• metabCombiner: Method for 'metabCombiner' object

Examples

data(plasma30)
data(plasma20)
p30 <- metabData(plasma30, samples = "CHEAR")
p20 <- metabData(plasma20, samples = "Red", rtmax = 17.25)

getStats(p30) #metabData stats

p.comb <- metabCombiner(xdata = p30, ydata = p20, binGap = 0.005)
p.comb <- selectAnchors(p.comb, tolmz = 0.003, tolQ = 0.3, windy = 0.02)
p.comb <- fit_gam(p.comb, iterFilter = 1, k = 20)

getStats(p.comb) #metabCombiner stats

hhabra/metabCombiner documentation built on June 5, 2024, 5:46 a.m.