dd.ecogen: Genetic data for the freshwater snail _Drepanotrema...

In hhwagner1/LandGenCourse: Interface for course "Landscape Genetic Data Analysis with R"

Genetic data for the freshwater snail Drepanotrema depressissimum

Description

Data used in Lamy et al. (2012).

Usage

dd.ecogen

Format

An 'ecogen' object with 1271 observations and the following slots:

XY

Spatial coordinates:

Longitude

West (WGS84)

Latitude

North (WGS84)

G

Genotypic data for 10 microsatellite loci:

DDE16

Genotypes at microsatellite locus DDE16 (two alleles, unseparated).

DDE4

Genotypes at microsatellite locus DDE4 (two alleles, unseparated).

DDE9

Genotypes at microsatellite locus DDE9 (two alleles, unseparated).

DDE12

Genotypes at microsatellite locus DDE12 (two alleles, unseparated).

DDE22

Genotypes at microsatellite locus DDE22 (two alleles, unseparated).

DDE20

Genotypes at microsatellite locus DDE20 (two alleles, unseparated).

DDE06

Genotypes at microsatellite locus DDE06 (two alleles, unseparated).

DDE14

Genotypes at microsatellite locus DDE14 (two alleles, unseparated).

DDE23

Genotypes at microsatellite locus DDE23 (two alleles, unseparated).

DDE3

Genotypes at microsatellite locus DDE3 (two alleles, unseparated).

A

Allele frequencies derived from slot @G

S

Structures (note that some sites were sampled in multiple years):

SiteID

Combination of SITE and YEAR

SITE

Site name (abbreviated)

YEAR

Year of sampling

References

Lamy, T., Pointier, J. P., Jarne, P. and David, P. (2012), Testing metapopulation dynamics using genetic, demographic and ecological data. Molecular Ecology, 21: 1394–1410. doi:10.1111/j.1365-294X.2012.05478.x

hhwagner1/LandGenCourse documentation built on Feb. 17, 2024, 4:42 p.m.