dd.genind: Genetic data for the freshwater snail _Drepanotrema...
In hhwagner1/LandGenCourse: Interface for course "Landscape Genetic Data Analysis with R"
dd.genind R Documentation
Genetic data for the freshwater snail Drepanotrema depressissimum
Description
Data used in Lamy et al. (2012). See 'dd.ecogen' for a detailed description.
Usage
dd.genind
Format
A 'genind' object with 1271 individuals, 10 loci, and 372 alleles:
- tab
1270 x 372 matrix of allele counts
- loc.n.all
number of alleles per locus (range: 18-50)
- all.names
list of allele names for each locus
- ploidy
ploidy of each individual (range: 2-2)
- type
codominant markers
- strata
a data frame with 4 columns ( SiteID, SITE, YEAR, Cluster )
- other
a list :
- xy
Spatial coordinates (longitude, latitude: WGS84)
References
Lamy, T., Pointier, J. P., Jarne, P. and David, P. (2012), Testing metapopulation dynamics using genetic, demographic and ecological data. Molecular Ecology, 21: 1394–1410. doi:10.1111/j.1365-294X.2012.05478.x
hhwagner1/LandGenCourse documentation built on Feb. 17, 2024, 4:42 p.m.
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| dd.genind | R Documentation |
Genetic data for the freshwater snail Drepanotrema depressissimum
Description
Data used in Lamy et al. (2012). See 'dd.ecogen' for a detailed description.
Usage
dd.genindFormat
A 'genind' object with 1271 individuals, 10 loci, and 372 alleles:
- tab
1270 x 372 matrix of allele counts
- loc.n.all
number of alleles per locus (range: 18-50)
- all.names
list of allele names for each locus
- ploidy
ploidy of each individual (range: 2-2)
- type
codominant markers
- strata
a data frame with 4 columns ( SiteID, SITE, YEAR, Cluster )
- other
a list :
- xy
Spatial coordinates (longitude, latitude: WGS84)
References
Lamy, T., Pointier, J. P., Jarne, P. and David, P. (2012), Testing metapopulation dynamics using genetic, demographic and ecological data. Molecular Ecology, 21: 1394–1410. doi:10.1111/j.1365-294X.2012.05478.x
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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