chipframe: Probe to Entrez Gene ID mappings

In hidelab/pathprintGEOData: Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

Description

Probe to Entrez Gene ID mappings for platforms covered by the pathway fingerprint

Usage

chipframe

Format

List with an entry for each GEO ID covered by pathprint (35 elements), each containing a list

ann

dataframe containing array probe to Entrez Gene ID mappings

title

character, array name

Details

The platform IDs correspond to GEO references http://www.ncbi.nlm.nih.gov/geo/

Source

Annotations obtained from the AILUN server http://ailun.stanford.edu/

References

Chen R., Li L., and Butte AJ (2007) AILUN: Reannotating Gene Expression Data Automatically, Nature Methods, 4(11), 879

Examples

data(chipframe)
names(chipframe)
chipframe$GPL570$title
head(chipframe$GPL570$ann)

hidelab/pathprintGEOData documentation built on May 17, 2019, 3:58 p.m.