Goodrich: Microbiome taxonomy dataset from Zhou and Gallins (2019).

In himelmallick/BayesRecipe: Bayesian Reciprocal Regularization

Microbiome taxonomy dataset from Zhou and Gallins (2019).

Description

16S genus-level abundances of 99 OTUs related to BMI in n = 414 human subjects, as described in Goodrich et al. (2014).

Usage

data(Goodrich)

Format

A data frame of taxonomic abundances of 99 OTUs in n = 414 human subjects. From a pool of 11,225 candidate features, OTUs were collapsed to the genus level by summing their respective relative abundances, discarding any OTUs which were unannotated at the genus level.

References

Zhou Y, Gallins D (2019). A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction. Frontiers in Genetics 10, 579.

Goodrich JK et al. (2014). Human Genetics Shape the Gut Microbiome. Cell 159(4): 789-799.

himelmallick/BayesRecipe documentation built on Aug. 4, 2024, 7:21 a.m.