SE2DGEList: SummarizedExperiment to DGEList
In hiraksarkar/edgeR_fork: Empirical Analysis of Digital Gene Expression Data in R
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Given any SummarizedExperiment data object, extract basic information needed and convert it into a DGEList object.
Usage
1
SE2DGEList(object)
Arguments
object
a SummarizedExperiment object. Must have counts in its assay component.
Details
This function takes a SummarizedExperiment data object as input.
The counts of the assay component of the input SummarizedExperiment data object is extracted and used as the counts component of the output DGEList object.
The rowRanges or rowData of the input is converted into a data.frame and used as genes in the output.
The colData of the input is also converted into a data.frame and used as the sample information in the output.
Value
A DGEList object.
Author(s)
Yunshun Chen and Gordon Smyth
Examples
1
2
3
4
5
6
## Not run:
library(SummarizedExperiment)
example(SummarizedExperiment)
y <- SE2DGEList(se)
## End(Not run)
hiraksarkar/edgeR_fork documentation built on Dec. 20, 2021, 3:52 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Given any SummarizedExperiment data object, extract basic information needed and convert it into a DGEList object.
Usage
1 | SE2DGEList(object)
|
Arguments
object |
a |
Details
This function takes a SummarizedExperiment data object as input.
The counts of the assay component of the input SummarizedExperiment data object is extracted and used as the counts component of the output DGEList object.
The rowRanges or rowData of the input is converted into a data.frame and used as genes in the output.
The colData of the input is also converted into a data.frame and used as the sample information in the output.
Value
A DGEList object.
Author(s)
Yunshun Chen and Gordon Smyth
Examples
1 2 3 4 5 6 | ## Not run:
library(SummarizedExperiment)
example(SummarizedExperiment)
y <- SE2DGEList(se)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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