hk1785/OMiSA: Optimal Microbiome-based Survival Analysis (OMiSA)
This software package provides facilities for the non-parametric methods 1) Optimal Microbiome-based Survival Analysis (OMiSA), 2) Optimal Microbiome-based Survival Analysis using Linear and Non-linear bases of OTUs (OMiSALN) and 3) Optimal Microbiome Regression-based Kernel Association Test for Survival traits (OMiRKAT-S). OMiSA, OMiSALN and OMiRKAT-S test the association between a microbial group (e.g., community, taxon) composition and a survival (time-to-event) response on human health/disease with or without covariate adjustments (e.g., age, sex).
Getting started
Browse package contents
Package details |
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| Author | Hyunwook Koh, Alexandra E. Livanos, Martin J. Blaser, Huilin Li |
| Maintainer | Hyunwook Koh <hk1785@nyu.edu> |
| License | GPL-2 |
| Version | 1.5 |
| URL | https://sites.google.com/site/huilinli09/software or https://github.com/hk1785/OMiSA |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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