hk1785/OMiSA: Optimal Microbiome-based Survival Analysis (OMiSA)

This software package provides facilities for 1) Optimal Microbiome-based Survival Analysis (OMiSA), 2) Optimal Microbiome-based Survival Analysis using Linear and Non-linear bases of OTUs (OMiSALN), and 3) Optimal Microbiome Regression-based Kernel Association Test for Survival traits (OMiRKAT-S). OMiSA, OMiSALN, and OMiRKAT-S test the association between microbial composition and survival (time-to-event) outcomes on human health or disease. The microbial composition in a microbial group (e.g., the entire community (e.g., bacterial kingdom) or individual higher-level taxon (e.g., phylum, class, order, family, and genus)) can be surveyed with/without covariate adjustments (e.g., age and sex).

Getting started

Package details

AuthorHyunwook Koh, Alexandra E. Livanos, Martin J. Blaser, Huilin Li
MaintainerHyunwook Koh <[email protected]>
URL or
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
hk1785/OMiSA documentation built on Oct. 12, 2018, 1:11 p.m.