hk1785/OMiSA: Optimal Microbiome-based Survival Analysis (OMiSA)
Version 1.4

This software package provides facilities for 1) Optimal Microbiome-based Survival Analysis (OMiSA), 2) Optimal Microbiome-based Survival Analysis using Linear and Non-linear bases of OTUs (OMiSALN), and 3) Optimal Microbiome Regression-based Kernel Association Test for Survival traits (OMiRKAT-S). OMiSA, OMiSALN, and OMiRKAT-S test the association between microbial composition and survival (time-to-event) outcomes on human health or disease. The microbial composition in a microbial group (e.g., the entire community (e.g., bacterial kingdom) or individual higher-level taxon (e.g., phylum, class, order, family, and genus)) can be surveyed with/without covariate adjustments (e.g., age and sex).

Getting started

Package details

AuthorHyunwook Koh, Alexandra E. Livanos, Martin J. Blaser, Huilin Li
MaintainerHyunwook Koh <[email protected]>
LicenseGPL-2
Version1.4
URL https://sites.google.com/site/huilinli09/software or https://github.com/hk1785/OMiSA
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("hk1785/OMiSA")
hk1785/OMiSA documentation built on June 23, 2018, 2:07 p.m.