This software package provides facilities for 1) Optimal Microbiome-based Survival Analysis (OMiSA), 2) Optimal Microbiome-based Survival Analysis using Linear and Non-linear bases of OTUs (OMiSALN), and 3) Optimal Microbiome Regression-based Kernel Association Test for Survival traits (OMiRKAT-S). OMiSA, OMiSALN, and OMiRKAT-S test the association between microbial composition and survival (time-to-event) outcomes on human health or disease. The microbial composition in a microbial group (e.g., the entire community (e.g., bacterial kingdom) or individual higher-level taxon (e.g., phylum, class, order, family, and genus)) can be surveyed with/without covariate adjustments (e.g., age and sex).
|Author||Hyunwook Koh, Alexandra E. Livanos, Martin J. Blaser, Huilin Li|
|Maintainer||Hyunwook Koh <[email protected]>|
|URL||https://sites.google.com/site/huilinli09/software or https://github.com/hk1785/OMiSA|
|Package repository||View on GitHub|
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