API for hloefflerwirth/scrat
Single Cell - R Analysis Toolbox
| Global functions | |
|---|---|
| GeneSet.Fisher | Source code |
| GeneSet.maxmean | Source code |
| Get.Running.Average | Source code |
| Quantile.Normalization | Source code |
| Sample.GSZ | Source code |
| biomart.available | Source code |
| calculateDelta | Source code |
| calculateEuclideanDistances | Source code |
| calculateNeighborhoodMatrix | Source code |
| col.pix | Source code |
| color.palette.discrete | Source code |
| get.beta.statistic | Source code |
| get.neighbors | Source code |
| macro.data.Seurat | Man page |
| macro.data.counts | Man page |
| matrixToCodebookMatrix | Source code |
| modules.CSV.sheets | Source code |
| modules.report.sheets | Source code |
| pipeline.calcStatistics | Source code |
| pipeline.cellcycleProcessing | Source code |
| pipeline.checkInputParameters | Source code |
| pipeline.createMetacells | Source code |
| pipeline.detectEnsemblDataset | Source code |
| pipeline.detectSpotsIntegral | Source code |
| pipeline.detectSpotsSamples | Source code |
| pipeline.generateSOM | Source code |
| pipeline.genesetStatisticIntegral | Source code |
| pipeline.genesetStatisticSamples | Source code |
| pipeline.groupAnalysis | Source code |
| pipeline.groupAssignment | Source code |
| pipeline.htmlSummary | Source code |
| pipeline.patAssignment | Source code |
| pipeline.prepareAnnotation | Source code |
| pipeline.prepareIndata | Source code |
| pipeline.pseudotimeEstimation | Source code |
| pipeline.pseudotimeReport | Source code |
| pipeline.sampleExpressionPortraits | Source code |
| pipeline.sampleSimilarityAnalysisCor | Source code |
| pipeline.sampleSimilarityAnalysisED | Source code |
| pipeline.sampleSimilarityAnalysisICA | Source code |
| pipeline.seuratPreprocessing | Source code |
| pipeline.summarySheetSeurat | Source code |
| pipeline.summarySheetsGroups | Source code |
| pipeline.summarySheetsModules | Source code |
| pipeline.summarySheetsSamples | Source code |
| scrat | Man page |
| scrat-package | Man page |
| scrat.genesets | Man page |
| scrat.new | Man page Source code |
| scrat.run | Man page Source code |
| som.linear.init | Source code |
| som.training | Source code |
| som.training.phase | Source code |
| util.cat | Source code |
| util.fatal | Source code |
| util.info | Source code |
| util.log | Source code |
| util.progress | Source code |
| util.progress.terminate | Source code |
| util.warn | Source code |
