scrat.genesets: Additional literature genesets
In hloefflerwirth/scrat: Single Cell - R Analysis Toolbox
scrat.genesets R Documentation
Additional literature genesets
Description
Genesets collected from publications and independent analyses.
Usage
data(scrat.genesets)
Format
The data set is stored in RData (binary) format. Each element of the list represents one distinct gene set and contains the Ensembl-IDs of the member genes.
Details
The scrat package allows for analysing the biological background of the samples using predefined sets of genes of known biological context. A large and diverse collection of such gene sets is automatically derived from the Gene Ontology (GO) annotation database using biomaRt interface. scrat.genesets contains about 150 additional gene sets collected from literature on cellular systems, and from previous analyses using the SOM pipeline.
hloefflerwirth/scrat documentation built on Sept. 2, 2022, 4:09 a.m.
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| scrat.genesets | R Documentation |
Additional literature genesets
Description
Genesets collected from publications and independent analyses.
Usage
data(scrat.genesets)
Format
The data set is stored in RData (binary) format. Each element of the list represents one distinct gene set and contains the Ensembl-IDs of the member genes.
Details
The scrat package allows for analysing the biological background of the samples using predefined sets of genes of known biological context. A large and diverse collection of such gene sets is automatically derived from the Gene Ontology (GO) annotation database using biomaRt interface. scrat.genesets contains about 150 additional gene sets collected from literature on cellular systems, and from previous analyses using the SOM pipeline.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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