API for hms-dbmi/scde
Single Cell Differential Expression
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onUnload | Source code |
| FLXMRglmC | Source code |
| FLXMRglmCf | Source code |
| FLXMRnb2glm | Source code |
| FLXMRnb2glmC | Source code |
| FLXMRnb2gth | Source code |
| FLXMRnb2gthC | Source code |
| FLXPmultinomW | Source code |
| ViewPagodaApp | Man page |
| ViewPagodaApp-class | Man page |
| bh.adjust | Source code |
| bwpca | Man page Source code |
| c.view.pathways | Source code |
| calculate.batch.joint.posterior.matrix | Source code |
| calculate.crossfit.models | Source code |
| calculate.failure.lfpm.p | Source code |
| calculate.failure.p | Source code |
| calculate.go.enrichment | Source code |
| calculate.individual.models | Source code |
| calculate.joint.posterior.matrix | Source code |
| calculate.posterior.matrices | Source code |
| calculate.ratio.posterior | Source code |
| clean.counts | Man page Source code |
| clean.gos | Man page Source code |
| col2hex | Source code |
| collapse.aspect.clusters | Source code |
| es.mef.small | Man page |
| estimate.library.sizes | Source code |
| estimate.signal.prior | Source code |
| fit.nb2.mixture.model | Source code |
| fit.nb2gth.mixture.model | Source code |
| get.component.model.lik | Source code |
| get.component.model.loglik | Source code |
| get.compressed.v1.model | Source code |
| get.compressed.v1.models | Source code |
| get.concomitant.prob | Source code |
| get.corr.theta | Source code |
| get.exp.logposterior.matrix | Source code |
| get.exp.posterior.matrix | Source code |
| get.exp.posterior.samples | Source code |
| get.exp.sample | Source code |
| get.fpm.estimates | Source code |
| get.ratio.posterior.Z.score | Source code |
| get.rep.set.general.model.logposteriors | Source code |
| get.rep.set.general.model.posteriors | Source code |
| get.rep.set.posteriors | Source code |
| get.scde.server | Source code |
| gev.t | Source code |
| glm.nb.fit | Source code |
| jpmatLogBatchBoot | Source code |
| jpmatLogBoot | Source code |
| knn | Man page |
| knn.error.models | Man page Source code |
| log.row.sums | Source code |
| make.pagoda.app | Man page Source code |
| matSlideMult | Source code |
| mc.stepFlexmix | Source code |
| o.ifm | Man page |
| one.sided.test.id | Source code |
| pagoda.cluster.cells | Man page Source code |
| pagoda.effective.cells | Man page Source code |
| pagoda.gene.clusters | Man page Source code |
| pagoda.pathway.wPCA | Man page Source code |
| pagoda.reduce.loading.redundancy | Man page Source code |
| pagoda.reduce.redundancy | Man page Source code |
| pagoda.show.pathways | Man page Source code |
| pagoda.subtract.aspect | Man page Source code |
| pagoda.top.aspects | Man page Source code |
| pagoda.varnorm | Man page Source code |
| pagoda.view.aspects | Man page Source code |
| pairs.panel.cor | Source code |
| pairs.panel.hist | Source code |
| pairs.panel.scatter | Source code |
| pairs.panel.smoothScatter | Source code |
| papply | Man page Source code |
| pathway.pc.correlation.distance | Source code |
| pgev.upper.log | Source code |
| plot.nb2.mixture.fit | Source code |
| pollen | Man page |
| quick.distribution.summary | Source code |
| sample.posterior | Source code |
| scde | Man page |
| scde-package | Man page |
| scde.browse.diffexp | Man page Source code |
| scde.edff | Man page |
| scde.error.models | Man page Source code |
| scde.expression.difference | Man page Source code |
| scde.expression.magnitude | Man page Source code |
| scde.expression.prior | Man page Source code |
| scde.failure.probability | Man page Source code |
| scde.fit.models.to.reference | Man page Source code |
| scde.posteriors | Man page Source code |
| scde.test.gene.expression.difference | Man page Source code |
| show.app | Man page Source code |
| sn | Source code |
| t.view.pathways | Source code |
| view.aspects | Man page Source code |
| weightedMatCenter | Source code |
| weightedMatVar | Source code |
| winsorize.matrix | Man page Source code |
