Files in hms-dbmi/scde
Single Cell Differential Expression

.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/functions.R README.md
data/es.mef.small.rda
data/knn.rda
data/o.ifm.rda
data/pollen.rda
data/scde.edff.rda
inst/NEWS
license.txt
man/ViewPagodaApp-class.Rd man/bwpca.Rd man/clean.counts.Rd man/clean.gos.Rd man/es.mef.small.Rd man/knn.Rd man/knn.error.models.Rd man/make.pagoda.app.Rd man/o.ifm.Rd man/pagoda.cluster.cells.Rd man/pagoda.effective.cells.Rd man/pagoda.gene.clusters.Rd man/pagoda.pathway.wPCA.Rd man/pagoda.reduce.loading.redundancy.Rd man/pagoda.reduce.redundancy.Rd man/pagoda.show.pathways.Rd man/pagoda.subtract.aspect.Rd man/pagoda.top.aspects.Rd man/pagoda.varnorm.Rd man/pagoda.view.aspects.Rd man/papply.Rd man/pollen.Rd man/scde.Rd man/scde.browse.diffexp.Rd man/scde.error.models.Rd man/scde.expression.difference.Rd man/scde.expression.magnitude.Rd man/scde.expression.prior.Rd man/scde.failure.probability.Rd man/scde.fit.models.to.reference.Rd man/scde.posteriors.Rd man/scde.test.gene.expression.difference.Rd man/show.app.Rd man/view.aspects.Rd man/winsorize.matrix.Rd
src/Makevars
src/Makevars.win
src/bwpca.cpp
src/bwpca.h
src/dqrdc.f
src/dqrdc2.f
src/dqrls.f
src/dqrsl.f
src/dqrutl.f
src/jpmatLogBoot.cpp
src/jpmatLogBoot.h
src/matSlideMult.cpp
src/matSlideMult.h
src/pagoda.cpp
src/pagoda.h
tests/tests.R vignettes/diffexp.Rmd vignettes/diffexp.md vignettes/experimental.Rmd vignettes/experimental.md
vignettes/figures/PAGODA.gif
vignettes/figures/experimental-data-1.png
vignettes/figures/experimental-pagoda-1.png
vignettes/figures/pagoda-Screen_Shot_2015-06-07_at_4.53.46_PM.png
vignettes/figures/pagoda-cell.model.fits-0.png
vignettes/figures/pagoda-clusterPCA-1.png
vignettes/figures/pagoda-controlForCellCycle-1.png
vignettes/figures/pagoda-correlatedCollapse-1.png
vignettes/figures/pagoda-showTopPathwayGenes-1.png
vignettes/figures/pagoda-tSNE-1.png
vignettes/figures/pagoda-topPathways-1.png
vignettes/figures/pagoda-topPathways2-1.png
vignettes/figures/pagoda-varnorm-1.png
vignettes/figures/pagoda-viewAspects-1.png
vignettes/figures/scde-batch-1.png
vignettes/figures/scde-detailed4-1.png
vignettes/figures/scde-diffexp3-1.png
vignettes/genesets.Rmd vignettes/genesets.md vignettes/pagoda.Rmd vignettes/pagoda.md vignettes/scde-manual.pdf
web/additional.css
web/pagoda.png
web/pathcl.css
web/pathcl.js
web/pathcl_canvas.js
web/pathcl_canvas_1.1.js
hms-dbmi/scde documentation built on March 29, 2018, 1:23 p.m.