clean.gos: Filter GOs list
In hms-dbmi/scde: Single Cell Differential Expression

clean.gos

R Documentation

Filter GOs list

Description

Filter GOs list and append GO names when appropriate

Usage

clean.gos(go.env, min.size = 5, max.size = 5000, annot = FALSE)

Arguments

`go.env`	GO or gene set list
`min.size`	Minimum size for number of genes in a gene set (default: 5)
`max.size`	Maximum size for number of genes in a gene set (default: 5000)
`annot`	Whether to append GO annotations for easier interpretation (default: FALSE)

Value

a filtered GO list

Examples


# 10 sample GOs
library(org.Hs.eg.db)
go.env <- mget(ls(org.Hs.egGO2ALLEGS)[1:10], org.Hs.egGO2ALLEGS)
# Filter this list and append names for easier interpretation
go.env <- clean.gos(go.env)

hms-dbmi/scde documentation built on April 19, 2023, 10:21 p.m.