Files in hms-dbmi/spacemut
Analysis of spatial mutation patterns.
.Rbuildignore
.Rhistory
.Rproj.user/203DB8E5/persistent-state
.Rproj.user/203DB8E5/sources/prop/4419FC95
.Rproj.user/203DB8E5/sources/prop/605A48EF
.Rproj.user/203DB8E5/sources/prop/90440286
.Rproj.user/203DB8E5/sources/prop/BE39A8FE
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.Rproj.user/203DB8E5/sources/prop/F35A3463
.Rproj.user/203DB8E5/sources/prop/FE2462A6
.Rproj.user/203DB8E5/sources/prop/INDEX
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/203DB8E5fbe21946/chunks.json
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/c1fpw3mnhb3hs/000002.csv
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/cg9jas52e8ifm/000004.csv
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/chunks.json
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/citw4m966vf52/000004.csv
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/ckp1q4pnf1qqq/000004.csv
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/ckp1q4pnf1qqq/000005.metadata
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/ckp1q4pnf1qqq/000005.rdf
.Rproj.user/shared/notebooks/4A4C2B05-inference_processes/1/s/csetup_chunk/000002.csv
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
NAMESPACE
R/spacemut_functions.R
README.md
man/com.Rd
man/draw.signature.Rd
man/extract.comp.Rd
man/parse.context.Rd
man/plot.intensities.Rd
man/plot.reflection.matrix.Rd
man/reflection.scatter.Rd
man/reflection.test.Rd
man/revert.context.Rd
man/revert.matrix.Rd
man/select.ncomponents.Rd
man/show.optimal.comp.Rd
man/spectra.bootstrap.Rd
man/visualize.bootstrap.Rd
spacemut.Rproj
spacemut/.gitignore
vignettes/.gitignore
vignettes/figure/unnamed-chunk-21-1.png
vignettes/figure/unnamed-chunk-22-1.png
vignettes/figure/unnamed-chunk-23-1.png
vignettes/figure/unnamed-chunk-27-1.png
vignettes/figure_old/unnamed-chunk-52-1.png
vignettes/figure_old/unnamed-chunk-53-1.png
vignettes/figure_old/unnamed-chunk-54-1.png
vignettes/figure_old/unnamed-chunk-55-1.png
vignettes/figure_old/unnamed-chunk-61-1.png
vignettes/figure_old/unnamed-chunk-62-1.png
vignettes/figure_old/unnamed-chunk-63-1.png
vignettes/figure_old/unnamed-chunk-65-1.png
vignettes/figure_old/unnamed-chunk-68-1.png
vignettes/inference_processes.Rmd
vignettes/inference_processes.md
vignettes/vrnmf_germline.Rmd
vignettes/vrnmf_germline.md
