spectra.bootstrap: Estimate robustness of components spectra using bootstrap
In hms-dbmi/spacemut: Analysis of spatial mutation patterns.
Description
Usage
Arguments
Value
Description
Estimate robustness of components spectra using bootstrap
Usage
1
2
spectra.bootstrap(icM, rate, n.comp = ncol(icM), n.boot = 100,
n.cores = 1)
Arguments
icM
matrix of components spectra
rate
matrix of mutation rates of mutation types in genomic windows
n.comp
number of extract components in bootstrap. By default ,the same as in icM
n.boot
number of bootstraps
n.cores
number of cores to use
Value
matrix of Spearman correlations between original and bootstrapped spectra of components
hms-dbmi/spacemut documentation built on Feb. 8, 2021, 6:27 a.m.
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Description Usage Arguments Value
Description
Estimate robustness of components spectra using bootstrap
Usage
1 2 | spectra.bootstrap(icM, rate, n.comp = ncol(icM), n.boot = 100,
n.cores = 1)
|
Arguments
icM |
matrix of components spectra |
rate |
matrix of mutation rates of mutation types in genomic windows |
n.comp |
number of extract components in bootstrap. By default ,the same as in icM |
n.boot |
number of bootstraps |
n.cores |
number of cores to use |
Value
matrix of Spearman correlations between original and bootstrapped spectra of components
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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