Man pages for hms-dbmi/spacemut
Analysis of spatial mutation patterns.
| com | Return complementary nucleotide |
| draw.signature | Draw component spectrum |
| extract.comp | Infer mutational components |
| parse.context | Parsing coded mutation type E.g. converts 'TCT_A' to a vector... |
| plot.intensities | Draw component intensities along the genome |
| plot.reflection.matrix | Plot heatmap of refelction correlation between all pairs of... |
| reflection.scatter | Scatterplot of spectrum and reverse complementary spectrum... |
| reflection.test | Classify components and group in processes based on... |
| revert.context | Return reverse complementary mutation types |
| revert.matrix | Reverse parsed matrix of mutation type |
| select.ncomponents | Estimate number of components with reflected property and... |
| show.optimal.comp | Show number of real mutational components and processes... |
| spectra.bootstrap | Estimate robustness of components spectra using bootstrap |
| visualize.bootstrap | Estimate robustness of components spectra using bootstrap |
