scSimulator: scSimulator

Description Usage Arguments Value

Description

It is to simulate transcriptome signature of a cell type by mimicing the use of the interesting scRNA-seq platform.

Usage

1
scSimulator(target, reference, method = c("bi", "qt"), lambda = 100, epsilon = 0.01, maxit = 100)

Arguments

target

An example data of the interesting scRNA-seq platform

reference

An example data of the cell type to be simulated

method

bi stands for the use of optimization, and qt stands for quantile transformation

lambda

The weight used in objective function

epsilon

A small value used in Kullback-Leibler divergence to avoid zeros

maxit

The maximum number of iterations

Value

Return a numeric vector


homopolymer/scSimulator documentation built on May 12, 2019, 12:26 a.m.