Description Usage Arguments Value
It is to simulate transcriptome signature of a cell type by mimicing the use of the interesting scRNA-seq platform.
1 | scSimulator(target, reference, method = c("bi", "qt"), lambda = 100, epsilon = 0.01, maxit = 100)
|
target |
An example data of the interesting scRNA-seq platform |
reference |
An example data of the cell type to be simulated |
method |
bi stands for the use of optimization, and qt stands for quantile transformation |
lambda |
The weight used in objective function |
epsilon |
A small value used in Kullback-Leibler divergence to avoid zeros |
maxit |
The maximum number of iterations |
Return a numeric vector
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