honzee/SNPsom
Containerized Somatic Variant Analysis

Package index
Search the honzee/SNPsom package
Vignettes
Functions
18
Source code
6
Man pages
6
Home
/
GitHub
/
honzee/SNPsom: Containerized Somatic Variant Analysis
/
Man pages

Man pages for honzee/SNPsom
Containerized Somatic Variant Analysis

bwa_mem2Align the reads with bwa-mem2 and directly output bam file
fastqcPerform fastqc on provided files
launchApplaunches the shinyApp
MarkDuplicatesSparkMark duplicates with MarkDuplicatesSpark
Mutect2Detect variants with Mutect2
trimmomaticPerform adapter trimming
honzee/SNPsom documentation built on July 27, 2022, 12:45 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close